SRP008469

ENA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Sorghum bicolor bulk RNA-seq via Genome Analyzer IIx yielding 9.6 billion bases (100% Q20, 100% Q30), indicating exceptional quality with minimal sequencing errors; comprehensive coverage supports gene expression profiling and variant discovery in this cereal crop.

Data type / assay

bulk-RNA-seq

Organism

Sorghum bicolor

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

10 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9574460620 reported

total reads 262760389 reported

n content pct 0.02 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 52.8 measured

mean read length 40 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 34.94 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 34.94 measured ×0.4 89%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0