SRP010086

ENA first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

454 GS FLX amplicon sequencing of symbiont metagenome produces very limited scale (~324k reads) with moderate quality (81.1% Q20), best suited for exploratory taxonomic surveys of endosymbionts rather than comprehensive community profiling.

Data type / assay

amplicon

Organism

symbiont metagenome

Instrument

454 GS FLX

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

10 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 184264438 reported

total reads 324434 reported

n content pct 0.016 measured

pct q20 bases 81.1 measured

pct q30 bases 81.1 measured

gc content pct 56.2 measured

mean read length 377 measured

mean base quality 24.9 measured

adapter content pct 0 measured

duplication rate pct 90.87 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81.1 measured ×1 56%

adapter content pct 0 measured ×0.5 100%

QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0