SRP012558

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human gut metagenome WGS from an Illumina HiSeq 2000 with 137 million short reads at perfect Q30 (100%), generating 27.4 billion bases. The exceptional quality supports metagenomic assembly and accurate species-level binning.

Data type / assay

WGS

Organism

human gut metagenome

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

18 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 27440048600 reported

total reads 137200243 reported

n content pct 0.009 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 40.1 measured

mean read length 100 measured

mean base quality 30 measured

adapter content pct 0.18 measured

duplication rate pct 28.09 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

duplication rate pct 28.09 measured ×0.5 37%

adapter content pct 0.18 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0