SRP013437

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Prunus davidiana (wild peach) bulk RNA-seq via Genome Analyzer IIx generating 125.5 billion bases (100% Q20, 100% Q30), delivering exceptionally deep plant transcriptomics with perfect sequence quality for comprehensive gene expression analysis.

Data type / assay

bulk-RNA-seq

Organism

Prunus davidiana

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

24 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 125506028270 reported

total reads 687105802 reported

n content pct 0.091 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 42.5 measured

mean read length 102 measured

mean base quality 30 measured

adapter content pct 21 measured

duplication rate pct 28.22 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 21 measured ×0.4 0%

duplication rate pct 28.22 measured ×0.4 100%

QC cost 44 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0