SRP013517

ENA first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens whole-exome sequencing via HiSeq 2000 yielding 69 billion bases (100% Q20, 100% Q30), enabling human genetic variant discovery at exceptional quality with targeted exon coverage.

Data type / assay

WES

Organism

Homo sapiens

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

5 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 69209670866 reported

total reads 342622133 reported

n content pct 0.116 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 45.5 measured

mean read length 101 measured

mean base quality 30 measured

adapter content pct 0.01 measured

duplication rate pct 4.14 measured

mean target coverage 1116.3 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 1116.3 extrapolated ×1.2 100%

pct q30 bases 100 measured ×1 100%

duplication rate pct 4.14 measured ×0.5 100%

adapter content pct 0.01 measured ×0.4 100%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0