SRP013631

ENA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Arabidopsis thaliana bulk RNA-seq from HiSeq 2000 yielding 95.8 billion bases (100% Q20, 100% Q30), delivering ultra-deep plant transcriptomics with perfect quality metrics enabling sensitive low-abundance transcript detection.

Data type / assay

bulk-RNA-seq

Organism

Arabidopsis thaliana

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

4 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 95792733001 reported

total reads 948442901 reported

n content pct 0.467 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 45.1 measured

mean read length 101 measured

mean base quality 30 measured

adapter content pct 0.27 measured

duplication rate pct 13.41 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0.27 measured ×0.4 100%

duplication rate pct 13.41 measured ×0.4 100%

QC cost 45 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0