Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRP014319

ENA first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HIV-1 M:B_89.6 amplicon sequencing via PacBio RS platform generating 11.6 billion bases (54% Q20) from 6.8 million long reads, enabling long-read amplicon profiling suitable for viral sequence variant and resistance mutation detection despite lower per-base accuracy.

Data type / assay
amplicon
Organism
HIV-1 M:B_89.6
Instrument
PacBio RS
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
84 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 11568677055 reported
total reads 6863821 reported
n content pct 0 measured
pct q20 bases 54 measured
pct q30 bases 29.6 measured
gc content pct 53.3 measured
mean read length 239.8 measured
mean base quality 24.6 measured
adapter content pct 0 measured
duplication rate pct 55 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 29.6 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0