SRP014427

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Caenorhabditis elegans bulk RNA-Seq from Illumina Genome Analyzer IIx with 1.1B reads at exceptional quality (100% ≥Q20 and Q30). Large-scale nematode transcriptomics dataset supporting comprehensive gene expression analysis in model organisms.

Data type / assay

bulk-RNA-seq

Organism

Caenorhabditis elegans

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

17 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 60378831016 reported

total reads 1137643188 reported

n content pct 0.013 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 46.8 measured

mean read length 50 measured

mean base quality 30 measured

adapter content pct 79.96 measured

duplication rate pct 23.78 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 79.96 measured ×0.4 0%

duplication rate pct 23.78 measured ×0.4 100%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0