SRP014568

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Saccharomyces cerevisiae W303 whole-genome sequencing on HiSeq 2000 generating 2.2 billion bases (94.9% Q20), supporting yeast genome analysis with good quality for variant detection.

Data type / assay

WGS

Organism

Saccharomyces cerevisiae W303

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

6 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2240099082 reported

total reads 13191941 reported

n content pct 0.007 measured

pct q20 bases 94.9 measured

pct q30 bases 94.9 measured

gc content pct 39.3 measured

mean read length 101 measured

mean base quality 28.6 measured

adapter content pct 4.8 measured

duplication rate pct 17.89 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.9 measured ×1 100%

duplication rate pct 17.89 measured ×0.5 69%

adapter content pct 4.8 measured ×0.4 73%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0