Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRP014819

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This 454 GS FLX Titanium amplicon survey of metagenome yields ~1M medium-length reads at high quality (97.2% ≥Q20/Q30), enabling marker-gene community profiling with moderate depth. Read-length constraints of 454 may limit chimera filtering; assess metadata for PCR target specificity and contamination controls.

Data type / assay
amplicon
Organism
metagenome
Instrument
454 GS FLX Titanium
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
276 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 392553041 reported
total reads 1077065 reported
n content pct 0.009 measured
pct q20 bases 97.2 measured
pct q30 bases 97.2 measured
gc content pct 52.6 measured
mean read length 339.5 measured
mean base quality 29.3 measured
adapter content pct 0 measured
duplication rate pct 93.79 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.2 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0