SRP015688

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Caenorhabditis elegans RNA-seq from an Illumina Genome Analyzer II with 335 million short reads at perfect Q30 (100%), generating 15.9 billion bases. The exceptional quality enables definitive analysis of nematode transcriptomics and developmental gene expression.

Data type / assay

bulk-RNA-seq

Organism

Caenorhabditis elegans

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

21 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 15993727966 reported

total reads 335339129 reported

n content pct 0.01 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 39.3 measured

mean read length 50 measured

mean base quality 30 measured

adapter content pct 0.11 measured

duplication rate pct 65.53 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0.11 measured ×0.4 100%

duplication rate pct 65.53 measured ×0.4 21%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0