SRP015751

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens amplicon sequencing via Genome Analyzer IIx generating 8.1 billion bases (100% Q20, 100% Q30), enabling high-quality human targeted genomic profiling.

Data type / assay

amplicon

Organism

Homo sapiens

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

8 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 8137610472 reported

total reads 53536911 reported

n content pct 0.107 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 52.3 measured

mean read length 76 measured

mean base quality 30 measured

adapter content pct 0.09 measured

duplication rate pct 88.41 measured

mean target coverage 131.3 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

adapter content pct 0.09 measured ×0.5 100%

QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0