SRP016091

ENA first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

52/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Lasioglossum albipes (sweat bee) WGS from an Illumina HiSeq 2000 with 440 million short reads at 76% Q30. The moderate quality and depth support understanding hymenopteran genetics and solitary bee genomics.

Data type / assay

WGS

Organism

Lasioglossum albipes

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

13 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 69565864444 reported

total reads 440362755 reported

n content pct 0.002 measured

pct q20 bases 85.4 measured

pct q30 bases 76.1 measured

gc content pct 43.3 measured

mean read length 100 measured

mean base quality 30.8 measured

adapter content pct 0.02 measured

duplication rate pct 21.45 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 52/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 76.1 measured ×1 31%

duplication rate pct 21.45 measured ×0.5 58%

adapter content pct 0.02 measured ×0.4 100%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0