SRP018118

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Arabidopsis thaliana bulk RNA-seq from HiSeq 2000 generating 45.1 billion bases (99% Q20), delivering ultra-deep plant transcriptomics with exceptional quality (96.8% Q30); comprehensive coverage supports isoform discovery and robust differential expression analysis.

Data type / assay

bulk-RNA-seq

Organism

Arabidopsis thaliana

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

8 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 45088034151 reported

total reads 884079101 reported

n content pct 0 measured

pct q20 bases 99 measured

pct q30 bases 96.8 measured

gc content pct 51.2 measured

mean read length 51 measured

mean base quality 38 measured

adapter content pct 0 measured

duplication rate pct 79.25 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.8 measured ×1 100%

mean base quality 38 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 79.25 measured ×0.4 0%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0