SRP020097

ENA first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mus musculus bulk RNA-Seq on AB SOLiD 4 System with 1.1B reads at lower quality (44.9% ≥Q20, 19.1% ≥Q30). Legacy color-space platform dataset; challenging for variant detection due to low per-base accuracy.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

AB SOLiD 4 System

Platform

ABI_SOLID

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

21 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 55563371300 reported

total reads 1111267426 reported

n content pct 0 measured

pct q20 bases 44.9 measured

pct q30 bases 19.1 measured

gc content pct 0 measured

mean read length 51 measured

mean base quality 17.3 measured

adapter content pct 0 measured

duplication rate pct 0.51 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 19.1 measured ×1 0%

mean base quality 17.3 measured ×0.6 0%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 0.51 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0