SRP021468

ENA first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens bulk RNA-seq via AB SOLiD 4 System produces 56M reads with high quality (97.7% ≥Q20, 95.5% ≥Q30), enabling human transcriptome profiling with color-space platform accuracy. SOLiD platform offers low substitution-error rates; specialized color-space analysis pipelines required for reanalysis but original data archived.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

AB SOLiD 4 System

Platform

ABI_SOLID

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

11 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6244851990 reported

total reads 56333424 reported

n content pct 0.045 measured

pct q20 bases 97.7 measured

pct q30 bases 95.5 measured

gc content pct 45.5 measured

mean read length 101 measured

mean base quality 36.9 measured

adapter content pct 46.78 measured

duplication rate pct 18.31 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.5 measured ×1 100%

mean base quality 36.9 measured ×0.6 100%

adapter content pct 46.78 measured ×0.4 0%

duplication rate pct 18.31 measured ×0.4 100%

QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0