SRP022956

ENA first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Sorghum bicolor WGS from an Illumina HiSeq 2000 with 6.3 billion short reads at 88% Q30, generating 594 billion bases. The large dataset supports plant genome assembly and population genomics across sorghum varieties.

Data type / assay

WGS

Organism

Sorghum bicolor

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1,727 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 594243568500 reported

total reads 6313466386 reported

n content pct 0.004 measured

pct q20 bases 94.7 measured

pct q30 bases 88.2 measured

gc content pct 51.7 measured

mean read length 100 measured

mean base quality 34.8 measured

adapter content pct 2.17 measured

duplication rate pct 16.65 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.2 measured ×1 91%

duplication rate pct 16.65 measured ×0.5 73%

adapter content pct 2.17 measured ×0.4 92%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0