SRP027504

ENA first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

43/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Haemonchus contortus (parasitic nematode) whole-genome sequencing via Genome Analyzer II generating 71.3 billion bases (64.5% Q20), supporting parasite genome sequencing though notably low quality (37.4% Q30) and elevated N-content (1.196%) constrain assembly quality.

Data type / assay

WGS

Organism

Haemonchus contortus

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

13 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 71253616782 reported

total reads 474018694 reported

n content pct 1.196 measured

pct q20 bases 64.5 measured

pct q30 bases 37.4 measured

gc content pct 46.5 measured

mean read length 100 measured

mean base quality 21.3 measured

adapter content pct 3.84 measured

duplication rate pct 2.92 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 43/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 37.4 measured ×1 0%

duplication rate pct 2.92 measured ×0.5 100%

adapter content pct 3.84 measured ×0.4 80%

QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0