SRP028277

SRA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human whole-exome sequencing on Illumina Genome Analyzer IIx with over 1B reads and perfect base quality (100% ≥Q20, 97.3% ≥Q30). Excellent dataset for variant discovery, disease association studies, and medical genomics applications.

Data type / assay

WES

Organism

Homo sapiens

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

24 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 150691626384 reported

total reads 1021764041 reported

n content pct 0 measured

pct q20 bases 100 measured

pct q30 bases 97.3 measured

gc content pct 47.3 measured

mean read length 60 measured

mean base quality 36.6 measured

adapter content pct 0 measured

duplication rate pct 76.19 measured

mean target coverage 2430.5 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 2430.5 extrapolated ×1.2 100%

pct q30 bases 97.3 measured ×1 100%

duplication rate pct 76.19 measured ×0.5 0%

adapter content pct 0 measured ×0.4 100%

QC cost 0 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0