SRP028409

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Opisthocomus hoazin (hoatzin, the stinkbird) WGS from an Illumina HiSeq 2000 with 1.5 billion short reads at 81% Q30, generating 184 billion bases. The data supports understanding unique avian digestive adaptations through comparative genomics.

Data type / assay

WGS

Organism

Opisthocomus hoazin

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

10 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 184618705538 reported

total reads 1468580389 reported

n content pct 0.01 measured

pct q20 bases 89.4 measured

pct q30 bases 80.9 measured

gc content pct 44.4 measured

mean read length 100 measured

mean base quality 32.6 measured

adapter content pct 0.07 measured

duplication rate pct 1.78 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.9 measured ×1 55%

duplication rate pct 1.78 measured ×0.5 100%

adapter content pct 0.07 measured ×0.4 100%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0