Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRP028573

ENA first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Homo sapiens amplicon sequencing via 454 GS FLX generates 174K reads with high quality (96.3% ≥Q20, 88% ≥Q30), enabling targeted variant profiling of specific genomic loci or gene panels. Small read count limits population-level inference; well-suited for focused clinical genotyping, deep resequencing validation, or technical-feasibility studies.

Data type / assay
amplicon
Organism
Homo sapiens
Instrument
454 GS FLX
Platform
CAPILLARY
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
21 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 25553049 reported
total reads 174640 reported
n content pct 0.007 measured
pct q20 bases 96.3 measured
pct q30 bases 88 measured
gc content pct 50.5 measured
mean read length 132.4 measured
mean base quality 37.1 measured
adapter content pct 0 measured
duplication rate pct 85.33 measured
mean target coverage 0.4 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88 measured ×1 90%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0