SRP028574

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens miRNA-seq via HiSeq 2000 from 16 samples totaling 43.7 billion bases (99.2% Q20), enabling comprehensive human microRNA expression profiling with outstanding quality.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

16 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 43733954550 reported

total reads 874679091 reported

n content pct 0.008 measured

pct q20 bases 99.2 measured

pct q30 bases 97.4 measured

gc content pct 52.8 measured

mean read length 50 measured

mean base quality 38.2 measured

adapter content pct 0 measured

duplication rate pct 84.83 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.4 measured ×1 100%

mean base quality 38.2 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 84.83 measured ×0.4 0%

QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0