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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
34/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
Human immunodeficiency virus 1
Instrument
454 GS Junior
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
421345562
reported
total reads
919102
reported
n content pct
0.036
measured
pct q20 bases
85.8
measured
pct q30 bases
70.1
measured
gc content pct
42
measured
mean read length
498.9
measured
mean base quality
32.8
measured
adapter content pct
0
measured
duplication rate pct
95.4
measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 34/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
70.1
measured
×1
1%
adapter content pct
0
measured
×0.5
100%
QC cost
25 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0