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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
73/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Sus scrofa
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
36288081276
reported
total reads
180308383
reported
mean coverage
14.5
extrapolated
n content pct
0.012
measured
pct q20 bases
97.7
measured
pct q30 bases
94.3
measured
gc content pct
41.6
measured
mean read length
101
measured
mean base quality
36.8
measured
adapter content pct
0
measured
duplication rate pct
0.68
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 73/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
14.5
extrapolated
×1.2
30%
pct q30 bases
94.3
measured
×1
100%
duplication rate pct
0.68
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
22 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0