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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
21/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Pseudomonas aeruginosa
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
139 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
115550825890
reported
total reads
449446201
reported
n content pct
0.049
measured
pct q20 bases
84.4
measured
pct q30 bases
74.1
measured
gc content pct
54.7
measured
mean read length
104
measured
mean base quality
30.4
measured
adapter content pct
21.87
measured
duplication rate pct
68.1
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 21/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
74.1
measured
×1
21%
mean base quality
30.4
measured
×0.6
40%
adapter content pct
21.87
measured
×0.4
0%
duplication rate pct
68.1
measured
×0.4
15%
QC cost
15 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0