SRP037786

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

42/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Gut metagenome clone library from a 454 GS FLX Titanium platform with 1.4 million long reads at 78% Q30. The longer sequences aid taxonomic assignment and resolving community composition compared to short-read approaches.

Data type / assay

WGS

Organism

gut metagenome

Instrument

454 GS FLX Titanium

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

108 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 760788092 reported

total reads 1405576 reported

n content pct 0.026 measured

pct q20 bases 94 measured

pct q30 bases 78.1 measured

gc content pct 53.2 measured

mean read length 507.1 measured

mean base quality 34.6 measured

adapter content pct 0 measured

duplication rate pct 98.23 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 42/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 78.1 measured ×1 41%

duplication rate pct 98.23 measured ×0.5 0%

adapter content pct 0 measured ×0.4 100%

QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0