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Provenance — who produced it, who reused it
Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
6 further papers cite this accession but reuse could not be confirmed.
Deep data QC
81/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Bos taurus
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
261 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
7926248150364.001
reported
total reads
41385591882
reported
mean coverage
2935.6
extrapolated
n content pct
0.155
measured
pct q20 bases
95.7
measured
pct q30 bases
80.4
measured
gc content pct
45.4
measured
mean read length
85.8
measured
mean base quality
33
measured
adapter content pct
0
measured
duplication rate pct
14.92
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 81/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
2935.6
extrapolated
×1.2
100%
pct q30 bases
80.4
measured
×1
52%
duplication rate pct
14.92
measured
×0.5
78%
adapter content pct
0
measured
×0.4
100%
QC cost
23 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0