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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
60/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Vaccinium corymbosum
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
6 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
23691856350
reported
total reads
157945709
reported
n content pct
0.47
measured
pct q20 bases
90.3
measured
pct q30 bases
83.5
measured
gc content pct
45.3
measured
mean read length
75
measured
mean base quality
32.1
measured
adapter content pct
18.63
measured
duplication rate pct
39.44
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 60/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
83.5
measured
×1
68%
mean base quality
32.1
measured
×0.6
68%
adapter content pct
18.63
measured
×0.4
8%
duplication rate pct
39.44
measured
×0.4
79%
QC cost
19 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0