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Provenance — who produced it, who reused it
Linked to 11 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
11 further papers cite this accession but reuse could not be confirmed.
Deep data QC
100/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
696 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
297703564691
reported
total reads
1538690476
reported
n content pct
3.36
measured
pct q20 bases
94.6
measured
pct q30 bases
94
measured
gc content pct
41.8
measured
mean read length
30
measured
mean base quality
35.1
measured
adapter content pct
0
measured
duplication rate pct
11.04
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
94
measured
×1
100%
mean base quality
35.1
measured
×0.6
100%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
11.04
measured
×0.4
100%
QC cost
2 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0