Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRP043574

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bacterial amplicon (*Phocaeicola dorei*), Illumina HiSeq 2000. F-grade (33/100) with severely degraded base quality: Q30=52.6% (scoring 0/100) and mean BQ=22.7, indicating template failure, enzymatic deficiency, or instrument malfunction. Over half of bases fall below Q20, introducing systematic errors across the dataset. Not suitable for reuse; resequencing required.

Data type / assay
amplicon
Organism
Phocaeicola dorei
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
947 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 79246105910 reported
total reads 392307455 reported
n content pct 0.045 measured
pct q20 bases 62.8 measured
pct q30 bases 52.6 measured
gc content pct 54.8 measured
mean read length 101 measured
mean base quality 22.7 measured
adapter content pct 0.01 measured
duplication rate pct 62.45 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 52.6 measured ×1 0%
adapter content pct 0.01 measured ×0.5 100%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0