SRP048624

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

High-quality amplicon dataset suitable for reuse despite 94% duplication, which is expected for 454 PCR-amplicon sequencing; strong Q30 (88%) and long reads (520.6 bp) support reliable taxonomic profiling.

Data type / assay

amplicon

Organism

pig gut metagenome

Instrument

454 GS FLX

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 133713639 reported

total reads 251522 reported

n content pct 0.014 measured

pct q20 bases 96 measured

pct q30 bases 88 measured

gc content pct 53.6 measured

mean read length 520.6 measured

mean base quality 36.5 measured

adapter content pct 0 measured

duplication rate pct 94.07 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88 measured ×1 90%

adapter content pct 0 measured ×0.5 100%

QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0