Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRP049081

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq (fish, MiSeq), perfect score (A=100/100) with outstanding metrics: large dataset (56M reads, 216bp), Q30 at 94.5%, low duplication (27.6%), minimal adapter (0.82%). High depth, library complexity, and quality all score perfectly; ideal for expression reuse.

Data type / assay
bulk-RNA-seq
Organism
Ctenopharyngodon idella
Instrument
Illumina MiSeq
Platform
ILLUMINA
N numbers (samples, groups)
4 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 24162299858 reported
total reads 55992780 reported
n content pct 0.015 measured
pct q20 bases 96 measured
pct q30 bases 94.5 measured
gc content pct 48.5 measured
mean read length 216.2 measured
mean base quality 36.6 measured
adapter content pct 0.82 measured
duplication rate pct 27.6 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.5 measured ×1 100%
mean base quality 36.6 measured ×0.6 100%
adapter content pct 0.82 measured ×0.4 100%
duplication rate pct 27.6 measured ×0.4 100%
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 flagged mean score 70