Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRP051383

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human hybrid (short+long) whole-genome sequencing with severe adapter contamination and low evidence strength. Moderate QC (80/100, B) but with critical concerns: adapter content of 25.32% indicates substantial contamination, and evidence_strength of 0.61 means that key metrics are extrapolated rather than directly measured; the adapter contamination will substantially reduce SNP calling accuracy. A deep measured QC pass is needed before reuse.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
654 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1927357060499 reported
total reads 3621489768 reported
mean coverage 621.7 extrapolated
n content pct 0.001 measured
pct q20 bases 91.6 measured
pct q30 bases 85.9 measured
gc content pct 40.4 measured
mean read length 125 measured
mean base quality 33.7 measured
adapter content pct 25.32 measured
duplication rate pct 0.88 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 621.7 extrapolated ×1.2 100%
pct q30 bases 85.9 measured ×1 80%
duplication rate pct 0.88 measured ×0.5 100%
adapter content pct 25.32 measured ×0.4 0%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0