SRP056612

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Comprehensive human RNA-seq via Illumina HiSeq 3000 with excellent quality (98.4% Q20) and high depth (839M reads), enabling robust isoform discovery and expression quantification. Substantial dataset size and quality make it suitable for meta-analyses and detecting subtle expression patterns across cellular contexts.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 3000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

20 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 169524587260 reported

total reads 839230630 reported

n content pct 0.003 measured

pct q20 bases 98.4 measured

pct q30 bases 95.2 measured

gc content pct 47.1 measured

mean read length 101 measured

mean base quality 36.8 measured

adapter content pct 1.8 measured

duplication rate pct 17.95 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.2 measured ×1 100%

mean base quality 36.8 measured ×0.6 100%

adapter content pct 1.8 measured ×0.4 100%

duplication rate pct 17.95 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0