SRP056687

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 7 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

7 further papers cite this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Arabidopsis thaliana

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1,135 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4775339004634.001 reported

total reads 28125226893 reported

mean coverage 35372.9 extrapolated

n content pct 0.005 measured

pct q20 bases 90.1 measured

pct q30 bases 81.4 measured

gc content pct 37.7 measured

mean read length 100 measured

mean base quality 32.8 measured

adapter content pct 0.56 measured

duplication rate pct 16.86 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 35372.9 extrapolated ×1.2 100%

pct q30 bases 81.4 measured ×1 57%

duplication rate pct 16.86 measured ×0.5 72%

adapter content pct 0.56 measured ×0.4 100%

QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0