Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRP066844

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S amplicon sequencing (454 platform) with strong quality; Q30=87.3% is the sole limiting factor while mean base quality of 36.5 is excellent; long reads (334.5bp) and expected amplicon-level duplication (99%) make this highly suitable for taxonomic profiling.

Data type / assay
amplicon
Organism
soil metagenome
Instrument
454 GS FLX Titanium
Platform
LS454
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 70076835 reported
total reads 209516 reported
n content pct 0.782 measured
pct q20 bases 96.2 measured
pct q30 bases 87.3 measured
gc content pct 43.6 measured
mean read length 334.5 measured
mean base quality 36.5 measured
adapter content pct 0 measured
duplication rate pct 98.98 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.3 measured ×1 87%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 78