SRP073692

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human WXS (whole exome sequencing) from an Illumina Genome Analyzer IIx with 6.4 billion short reads at 90% Q30, generating 1.1 trillion bases. The massive coverage of coding regions enables sensitive variant discovery in clinical genetics applications.

Data type / assay

WES

Organism

Homo sapiens

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

35 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1141989578792 reported

total reads 6405719391 reported

n content pct 0.001 measured

pct q20 bases 95.1 measured

pct q30 bases 90.4 measured

gc content pct 43.8 measured

mean read length 74 measured

mean base quality 32.6 measured

adapter content pct 0 measured

duplication rate pct 7.69 measured

mean target coverage 18419.2 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 18419.2 extrapolated ×1.2 100%

pct q30 bases 90.4 measured ×1 100%

duplication rate pct 7.69 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0