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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
33/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
Homo sapiens
Instrument
AB 3730xL Genetic Analyzer
Platform
CAPILLARY
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
10 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
6602877
reported
total reads
9270
reported
n content pct
32.33
measured
pct q20 bases
53.7
measured
pct q30 bases
50.3
measured
gc content pct
29.5
measured
mean read length
466.6
measured
mean base quality
30.8
measured
adapter content pct
0
measured
duplication rate pct
18.3
measured
mean target coverage
0.1
extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
50.3
measured
×1
0%
adapter content pct
0
measured
×0.5
100%
QC cost
1 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0