Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRP102024

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse gut metagenome amplicon sequencing. Poor quality: Q30 bases 37.5% (critical failure at 0/100 weight)—majority of bases below confidence threshold—combined with extreme 96.92% duplication (PCR/sequencing artifacts). Not suitable for variant or taxonomic inference without major sequence filtering; reuse not recommended.

Data type / assay
amplicon
Organism
mouse gut metagenome
Instrument
Ion Torrent PGM
Platform
ION_TORRENT
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
180 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1366260731 reported
total reads 9101517 reported
n content pct 0 measured
pct q20 bases 85.3 measured
pct q30 bases 37.5 measured
gc content pct 46.7 measured
mean read length 151.6 measured
mean base quality 26.1 measured
adapter content pct 0 measured
duplication rate pct 96.92 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 37.5 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0