SRP102877

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

59/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing from Saccharomyces cerevisiae on HiSeq 2500 with >754 million reads and ~14000× estimated coverage, providing massive redundancy suitable for variant validation and deep structural analysis.

Data type / assay

WGS

Organism

Saccharomyces cerevisiae

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

819 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 170774754900 reported

total reads 754151569 reported

mean coverage 14231.2 extrapolated

n content pct 0.045 measured

pct q20 bases 79.3 measured

pct q30 bases 73.7 measured

gc content pct 54.7 measured

mean read length 150 measured

mean base quality 31 measured

adapter content pct 87.71 measured

duplication rate pct 12.24 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 59/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 14231.2 extrapolated ×1.2 100%

pct q30 bases 73.7 measured ×1 19%

duplication rate pct 12.24 measured ×0.5 87%

adapter content pct 87.71 measured ×0.4 0%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0