SRP107059

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from Saccharomyces cerevisiae on HiSeq 2500 with ~33 million reads and good quality (96.6% Q20, 95% Q30), providing reliable yeast transcriptome data for functional genomics and pathway studies.

Data type / assay

bulk-RNA-seq

Organism

Saccharomyces cerevisiae

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

22 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2142541765 reported

total reads 32962181 reported

n content pct 0.001 measured

pct q20 bases 96.6 measured

pct q30 bases 95 measured

gc content pct 43 measured

mean read length 61 measured

mean base quality 36.3 measured

adapter content pct 0.61 measured

duplication rate pct 59.84 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95 measured ×1 100%

mean base quality 36.3 measured ×0.6 100%

adapter content pct 0.61 measured ×0.4 100%

duplication rate pct 59.84 measured ×0.4 34%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0