SRP112596

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human gut 16S amplicon, Illumina MiSeq. A-grade (91/100) with clean library (0.01% adapters) and Q30=87.3% (adequate for taxonomic assignment). Duplication=95.67% is inherent to amplicon assays and does not penalize reusability; read length (251 bp) provides excellent 16S V4/V5 resolution. Suitable for reuse in microbiome profiling and comparative studies.

Data type / assay

amplicon

Organism

human gut metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

59 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3824372544 reported

total reads 15236544 reported

n content pct 0 measured

pct q20 bases 91.5 measured

pct q30 bases 87.3 measured

gc content pct 49.2 measured

mean read length 251 measured

mean base quality 34.7 measured

adapter content pct 0.01 measured

duplication rate pct 95.67 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.3 measured ×1 87%

adapter content pct 0.01 measured ×0.5 100%

QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0