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Provenance — who produced it, who reused it
Linked to 9 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
9 further papers cite this accession but reuse could not be confirmed.
Deep data QC
58/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
Homo sapiens
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
6,633 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
3413812402132
reported
total reads
20466255373
reported
n content pct
0.107
measured
pct q20 bases
89.8
measured
pct q30 bases
77.3
measured
gc content pct
41.7
measured
mean read length
100
measured
mean base quality
34.2
measured
adapter content pct
0.5
measured
duplication rate pct
9.85
measured
mean target coverage
55061.5
extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 58/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
77.3
measured
×1
37%
adapter content pct
0.5
measured
×0.5
100%
QC cost
5 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0