Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRP115440

SRA

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq (Cornus officinalis). A grade, suitable for reuse. High base quality (Q30=89.4%, mean Q=37.6) with minimal adapter contamination (0.65%) provides solid ground for expression analysis, though Q30 is slightly lower than premium datasets.

Data type / assay
bulk-RNA-seq
Organism
Cornus officinalis
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3616845016 reported
total reads 23952616 reported
n content pct 0.004 measured
pct q20 bases 95.6 measured
pct q30 bases 89.4 measured
gc content pct 46 measured
mean read length 151 measured
mean base quality 37.6 measured
adapter content pct 0.65 measured
duplication rate pct 30.03 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.4 measured ×1 97%
mean base quality 37.6 measured ×0.6 100%
adapter content pct 0.65 measured ×0.4 100%
duplication rate pct 30.03 measured ×0.4 100%
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 flagged mean score 45