SRP116669

SRA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

16S amplicon sequencing from Mus musculus on MiSeq with >153 million reads and moderate quality (88.1% Q20, 88.1% Q30), providing substantial coverage for comprehensive mouse microbiota profiling despite moderate per-base quality.

Data type / assay

amplicon

Organism

Mus musculus

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

14 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6887741805 reported

total reads 153060929 reported

n content pct 0.008 measured

pct q20 bases 88.1 measured

pct q30 bases 88.1 measured

gc content pct 40.4 measured

mean read length 45 measured

mean base quality 26.8 measured

adapter content pct 0 measured

duplication rate pct 84.16 measured

mean target coverage 127.6 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.1 measured ×1 91%

adapter content pct 0 measured ×0.5 100%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0