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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
84/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
human oral metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
104 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
4165799666
reported
total reads
6919933
reported
n content pct
0
measured
pct q20 bases
94.2
measured
pct q30 bases
85.3
measured
gc content pct
52.3
measured
mean read length
301
measured
mean base quality
34.5
measured
adapter content pct
0.02
measured
duplication rate pct
94.76
measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 84/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
85.3
measured
×1
77%
adapter content pct
0.02
measured
×0.5
100%
QC cost
9 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0