Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRP124782

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

MiSeq gut amplicon profiling from mouse samples with lower per-read quality (86.3% Q20) across ~2.4 million reads, best suited for high-sample-throughput microbiome surveys prioritizing cost efficiency over accuracy.

Data type / assay
amplicon
Organism
mouse gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
11 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1453061848 reported
total reads 2413724 reported
n content pct 0.032 measured
pct q20 bases 86.3 measured
pct q30 bases 74 measured
gc content pct 46.6 measured
mean read length 301 measured
mean base quality 31.8 measured
adapter content pct 0.48 measured
duplication rate pct 91.91 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 74 measured ×1 20%
adapter content pct 0.48 measured ×0.5 100%
QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0