SRP126558

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

16S amplicon sequencing from Saccharomyces cerevisiae on HiSeq 4000 with >905 million reads and good quality (95.6% Q20, 88.2% Q30), representing exceptional over-sequencing of microbial amplicons potentially due to contamination or mislabeling.

Data type / assay

amplicon

Organism

Saccharomyces cerevisiae

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

72 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 273356517966 reported

total reads 905154033 reported

n content pct 0.014 measured

pct q20 bases 95.6 measured

pct q30 bases 88.2 measured

gc content pct 47 measured

mean read length 151 measured

mean base quality 37.3 measured

adapter content pct 1.16 measured

duplication rate pct 87.22 measured

mean target coverage 1138985.5 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.2 measured ×1 91%

adapter content pct 1.16 measured ×0.5 99%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0