SRP131512

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-exome sequencing from Corallorhiza bentleyi (coral root orchid) on HiSeq 2000 with >57 million reads and excellent quality (99.7% Q20, 98% Q30), enabling high-confidence variant discovery in this non-photosynthetic plant lineage.

Data type / assay

WES

Organism

Corallorhiza bentleyi

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

49 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 8335346230 reported

total reads 57027161 reported

n content pct 0 measured

pct q20 bases 99.7 measured

pct q30 bases 98 measured

gc content pct 39.3 measured

mean read length 133.1 measured

mean base quality 38.2 measured

adapter content pct 0.04 measured

duplication rate pct 55.1 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98 measured ×1 100%

duplication rate pct 55.1 measured ×0.5 0%

adapter content pct 0.04 measured ×0.4 100%

QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0