SRP131660

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

58/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-exome sequencing from Geonoma camana (palm) on MiSeq with ~5.4 million reads and good quality (86.5% Q20, 82.1% Q30), enabling variant discovery in this tropical plant lineage using targeted capture.

Data type / assay

WES

Organism

Geonoma camana

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

17 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3124608158 reported

total reads 5378993 reported

n content pct 0 measured

pct q20 bases 86.5 measured

pct q30 bases 82.1 measured

gc content pct 42.4 measured

mean read length 301 measured

mean base quality 32.3 measured

adapter content pct 55.47 measured

duplication rate pct 4.58 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 58/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.1 measured ×1 61%

duplication rate pct 4.58 measured ×0.5 100%

adapter content pct 55.47 measured ×0.4 0%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0